Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs79718798 chr2:121545716 A/G 0.000238 175 25.53 24.37 59.77 KM Plot
PCPG rs79722094 chr11:18149564 G/A 4.13E-6 176 27.2 23.48 10.3 KM Plot
PCPG rs79739807 chr2:118718789 A/G 1.6E-5 178 25.17 30.93 11.65 KM Plot
PCPG rs79750959 chr12:56702012 C/A 1.01E-7 177 25.35 29.13 0.8 KM Plot
PCPG rs7976187 chr12:53504373 T/C 1.19E-10 174 25.08 27.08 3.05 KM Plot
PCPG rs79763140 chr7:158864131 C/A 0 175 25.4 41.8 3.17 KM Plot
PCPG rs7976409 chr12:21635605 G/A 2.47E-8 175 25.28 25.67 2.28 KM Plot
PCPG rs7976415 chr12:21635625 G/A 2.45E-8 175 25.17 26.47 2.28 KM Plot
PCPG rs79767670 chr2:118581115 C/T 1.95E-5 176 25.28 28.45 11.65 KM Plot
PCPG rs79786652 chr7:36171054 G/A 0.000426 177 25.67 24.7 14.37 KM Plot
PCPG rs79820208 chr7:36174873 T/C 0.000433 177 25.6 24.6 14.37 KM Plot
PCPG rs79820245 chr7:36184505 C/A 0.000423 178 25.67 24.6 14.37 KM Plot
PCPG rs79820374 chr1:150924167 G/A 6.28E-5 171 24.23 41.27 15 KM Plot
PCPG rs79824801 chr12:56728137 T/C 1.01E-7 177 25.35 29.13 0.8 KM Plot
PCPG rs7982674 chr13:37578090 G/C 0.000272 178 4.17 25 25.47 KM Plot